MmuEX6086200 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65938615-65944182:-
Coord C1 exon
chr11:65944066-65944182
Coord A exon
chr11:65940101-65940251
Coord C2 exon
chr11:65938615-65938729
Length
151 bp
Sequences
Splice sites
3' ss Seq
ATCATCTTCCCTCTCTACAGCTA
3' ss Score
10.49
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
GAATTTGAAAATGATGTCTGTGAGTTTAACAAAAGAGTGGAAGATCTTGACCGGAGACTGGGGACTATCTTAATTCAAGCTTTTGATGATGCACCTGATGTGGAACATGCCTTTAAG
Seq A exon
CTACTGGACATCACAGGAACCCTCATCAAAAGACCCCTGGTAGCACAGGATGTATCACAAAAATACCTGGCCCTCATCCGAATGTTCAGCACAGAACTGGATGCTGTGAGGGTCATCTACAGTCAGCACATCCAGAAGGAGGCAGAGCATG
Seq C2 exon
GATTCTCCCCCGTGCACAAGAACATGCCCACTATGGCTGGCGGCATCTGCTGGGCACAGGAACTGAGGCAGCGCGTCAAGGGTCCCTTTGGCAACTTCAAAAACATACCACATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'8-9,'8-8,9-9=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.077
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(11.2=100)
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATTTGAAAATGATGTCTGTGAGTT
R:
TGTGGTATGTTTTTGAAGTTGCCA
Band lengths:
229-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: