HsaEX6021167 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11535904-11543701:+
Coord C1 exon
chr17:11535904-11536020
Coord A exon
chr17:11539951-11540101
Coord C2 exon
chr17:11543587-11543701
Length
151 bp
Sequences
Splice sites
3' ss Seq
TTCCTCCACCTTCCCTACAGCTG
3' ss Score
10.65
5' ss Seq
TTGGTAGGC
5' ss Score
5.85
Exon sequences
Seq C1 exon
GACTTTGAAAATGACGTCTCTGAATTTAACCAGAAAGTAGAAGATCTTGACCGAAGATTGGGGACTATCTTTATTCAAGCTTTTGATGATGCACCTGGCTTGGAGCATGCCTTTAAG
Seq A exon
CTGCTAGACATAGCAGGAAACCTCCTTGAAAGACCGCTGGTAGCGAGGGATACATCTGATAAATACCTGGTCCTCATCCAAATGTTCAACAAAGATCTGGATGCAGTGAGGATGATCTACAGTCAGCACGTCCAGGAGGAAGCAGAACTTG
Seq C2 exon
GGTTCTCCCCGGTGCACAAGAACATGCCCACCGTGGCTGGCGGCCTCCGCTGGGCACAGGAGCTGAGGCAGCGCATCCAGGGTCCTTTCAGCAACTTTGGACGCATCACACACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'7-8,'7-7,8-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.051
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(8.6=100)
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTTGAAAATGACGTCTCTGA
R:
GTGTGATGCGTCCAAAGTTGC
Band lengths:
228-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)