RnoEX6047724 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52665572-52670944:-
Coord C1 exon
chr10:52670828-52670944
Coord A exon
chr10:52666982-52667132
Coord C2 exon
chr10:52665572-52665686
Length
151 bp
Sequences
Splice sites
3' ss Seq
TCATTTTCCCCTCTCTACAGCTC
3' ss Score
11.66
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
GAATTTGAAAATGATGTTTGTGGATTTAACAAGAGAGTGGAAGATCTTGACCGAAGACTCGGGACTATCTTAATTCAAGCTTTTGATGATGTACCTGAGGTAGAGCACGCCTTTAAG
Seq A exon
CTCCTAGATATCACAGGGACCCTTGTCGAAAGACCCCTGGTAGCACAGGATGTGTCACACAAATACCTGGCCCTCATCCGAATGTTCAACACAGAACTGGATGCCGTGAGGATCATCTACAGTCAGCACATCCGGGAAGAGGTGGAGCATG
Seq C2 exon
GATTCTCTCCCGTGCACAAAAATATGCCCACTATGGCTGGGGGCATCCGCTGGGCACAGGAACTGAGGCAGCGCATCAAGGGTCCCTTCAGCAACTTCAAAAATATACCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'9-10,'9-8,11-10=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.051
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(8.6=100)
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTGTGGATTTAACAAGAGAGTGG
R:
CAGTGTGGTATATTTTTGAAGTTGCT
Band lengths:
218-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]