GgaEX6015794 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1024217-1025694:+
Coord C1 exon
chr18:1024217-1024333
Coord A exon
chr18:1024532-1024682
Coord C2 exon
chr18:1025580-1025694
Length
151 bp
Sequences
Splice sites
3' ss Seq
CTGCTTGTTCACCTCTGCAGCTG
3' ss Score
8.95
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GATTTTGAGCAAGATGCCTTTGATTTCCAGCAGAAAGTAGAAGACATTGACCGGCGCCTGGGGACTGTTTTCATCCAGGCCTTTGATGATGCCTCGGACTTGGATCACACCTTCAAG
Seq A exon
CTGCTGGAGATGTTTGGGAGCCTTTTGGAGCGGCCAGTAATCGCTGCGGATGCTGCTGGCAAATACCCTGACCTCATCCGCATGTTCAGCAGTGCCTTGAGTGATGCTAGGCTGATCTACTCCAGGCACGTACGGGCAGAGCTGGAGCTTG
Seq C2 exon
GATTCCCTCCTGTGCATAAGAACATGCCGCTGGTAGCTGGAGCGCTGCGCTGGGCTCAGGAGCTGCGGGCGCGGATCCAGGCGCAGTTTGGTCCCTTCAGACACATCACACACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF083857=DHC_N1=FE(6.5=100)
A:
PF083857=DHC_N1=FE(8.6=100)
C2:
PF083857=DHC_N1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAAGATGCCTTTGATTTCCA
R:
GGGTGTGTGATGTGTCTGAAGG
Band lengths:
226-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]