DreEX6067450 @ danRer10
Exon Skipping
Gene
ENSDARG00000059026 | zgc:123217
Description
zgc:123217 [Source:ZFIN;Acc:ZDB-GENE-051113-188]
Coordinates
chr12:3999979-4005249:+
Coord C1 exon
chr12:3999979-4000002
Coord A exon
chr12:4001512-4001674
Coord C2 exon
chr12:4004975-4005249
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTATAATTTGTTGACTGCAGAAT
3' ss Score
6.1
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
Exon sequences
Seq C1 exon
ACTCAAACGCACAGACAACATATG
Seq A exon
AATGTGGGGTGGCTCCTCTAAATACACGTATTGTGGGTGGCACCGATGCCCCTGCAGGTAGCTGGCCCTGGCAGGTCAGCATACATTACAACAACAGGCACATCTGTGGAGGAACACTGATCCACAGCCAGTGGGTGATGACGGCCGCTCACTGCATCATCAA
Seq C2 exon
TACTAACATCAACGTCTGGACGCTGTACTTGGGGAGGCAAACCCAGAGCACGTCTGTGGCTAACCCAAATGAAGTCAAAGTTGGCCTTCAGTCCATCATCGTCCATCCAAGCTTCAACAACTCACTTCTCAACAATGACATCTCCTTGATGAAACTGAGTCAACCGGTGAACTTCAGTCAGTATATTCGTCCCATCTGCCTGGCAGCCAATAACAGCATCTTTTACAATGGCACATCCTGCTGGGCCACGGGTTGGGGAAACATCGGCAAAGACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059026-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.011
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.8=80.0)
C2:
PF0008921=Trypsin=FE(39.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCAAACGCACAGACAACAT
R:
ATGCTGTTATTGGCTGCCAGG
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]