MmuEX6018454 @ mm9
Exon Skipping
Gene
ENSMUSG00000061259 | Tmprss11d
Description
transmembrane protease, serine 11d [Source:MGI Symbol;Acc:MGI:2385221]
Coordinates
chr5:86738289-86756681:-
Coord C1 exon
chr5:86756643-86756681
Coord A exon
chr5:86755433-86755610
Coord C2 exon
chr5:86738289-86738548
Length
178 bp
Sequences
Splice sites
3' ss Seq
GATGATGTTGTTGTTGCTAGAAT
3' ss Score
4.99
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
CACTCACTGACCAGGATACAGAAAATGTTTTGACTCAAG
Seq A exon
AATGTGGAGCACGTCCAGACCTTATAACACTGTCAGAAGAGAGAATCATTGGAGGCATGCAAGCTGAGCCCGGTGACTGGCCCTGGCAAGTCAGTCTACAGCTCAATAATGTCCACCACTGTGGAGGTGCCCTGATCAGTAACATGTGGGTCCTGACAGCAGCTCATTGCTTCAAAAG
Seq C2 exon
CTATCCTAATCCTCAATATTGGACAGCCACCTTTGGGGTTTCTACAATGAGCCCTAGGCTGAGAGTGAGAGTAAGGGCTATTTTAGCCCACGACGGGTACAGCTCCGTAACTCGTGACAATGACATCGCAGTTGTACAACTTGACAGATCTGTCGCCTTTTCCAGAAATATCCATAGGGTATGTCTCCCAGCAGCAACCCAAAATATCATCCCTGGTTCTGTCGCATATGTTACAGGATGGGGATCTCTCACATATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061259-'5-7,'5-6,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.240 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.5=73.3)
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACTGACCAGGATACAGA
R:
ATTTTGGGTTGCTGCTGGGAG
Band lengths:
244-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: