HsaEX1041377 @ hg38
Exon Skipping
Gene
ENSG00000153802 | TMPRSS11D
Description
transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:HGNC:24059]
Coordinates
chr4:67827261-67838329:-
Coord C1 exon
chr4:67838172-67838329
Coord A exon
chr4:67833204-67833381
Coord C2 exon
chr4:67827261-67827520
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTAATGCCCTTTCTCATTAGAAT
3' ss Score
7.81
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCAAGATGGTAGTGGTGTGAGAGCGGATGTTGTCATGAAATTTCAATTCACTAGAAATAACAATGGAGCATCAATGAAAAGCAGAATTGAGTCTGTTTTACGACAAATGCTGAATAACTCTGGAAACCTGGAAATAAACCCTTCAACTGAGATAACAT
Seq A exon
AATGTGGGGCCGGTCCAGACCTAATAACATTGTCTGAGCAGAGAATCCTTGGAGGCACTGAGGCTGAGGAGGGAAGCTGGCCGTGGCAAGTCAGTCTGCGGCTCAATAATGCCCACCACTGTGGAGGCAGCCTGATCAATAACATGTGGATCCTGACAGCAGCTCACTGCTTCAGAAG
Seq C2 exon
CAACTCTAATCCTCGTGACTGGATTGCCACGTCTGGTATTTCCACAACATTTCCTAAACTAAGAATGAGAGTAAGAAATATTTTAATTCATAACAATTATAAATCTGCAACTCATGAAAATGACATTGCACTTGTGAGACTTGAGAACAGTGTCACCTTTACCAAAGATATCCATAGTGTGTGTCTCCCAGCTGCTACCCAGAATATTCCACCTGGCTCTACTGCTTATGTAACAGGATGGGGCGCTCAAGAATATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153802_MULTIEX3-2/3=C1-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=PD(43.6=88.9)
A:
PF0008921=Trypsin=PU(19.5=73.3)
C2:
PF0008921=Trypsin=FE(38.5=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAATAACTCTGGAAACCTGG
R:
ATTCTGGGTAGCAGCTGGGAG
Band lengths:
256-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains