BtaEX6031496 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001925 | TMPRSS11D
Description
transmembrane protease, serine 11D [Source:HGNC Symbol;Acc:HGNC:24059]
Coordinates
chr6:85258879-85265880:-
Coord C1 exon
chr6:85265839-85265880
Coord A exon
chr6:85262400-85262577
Coord C2 exon
chr6:85258879-85259138
Length
178 bp
Sequences
Splice sites
3' ss Seq
TTACTTCCCTTTCCCATTAGAAT
3' ss Score
9.13
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TAGCAATAACTGGCCAGGATACAATACAACTGTTCACTCGAG
Seq A exon
AATGTGGGGTCCGCTCAGACCTGATAACCTTGTCTGAGGAGAGAATCATAGGAGGCAGTAAAGCTGAGAAAGGAGACTGGCCATGGCAAGTCAGTCTACAGTGGAGCAGTTCTCACCGCTGCGGAGGAGCCTTGATCAGTAATAGGTGGATCCTGTCAGCAGCTCACTGCTTCAGAAG
Seq C2 exon
CCACTCTGATCCTCGCCAATGGATTGCCACCTTTGGTACTTCCACAATATCTCCTCAACTGAGAGTAGGAGTAAGGAATATTTTAATCCATGACAATTATAAACCTGAAACTCATGAAAACGATATTGCACTCGTACAACTTGATAGAGAAGTCACCTTTAACAGATATATTCATACAGTGTGTCTCCCAGAGGCTAACCAGGCCATTTCAGCTGGTTCCACTGCTTATGTAACAGGATGGGGATCTCAGAGTTATAGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001925-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(19.5=73.3)
C2:
PF0008921=Trypsin=FE(38.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAATAACTGGCCAGGATACA
R:
AGCTGAAATGGCCTGGTTAGC
Band lengths:
255-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]