HsaEX6043358 @ hg38
Exon Skipping
Gene
ENSG00000052344 | PRSS8
Description
protease, serine 8 [Source:HGNC Symbol;Acc:HGNC:9491]
Coordinates
chr16:31132682-31135171:-
Coord C1 exon
chr16:31135154-31135171
Coord A exon
chr16:31133226-31133388
Coord C2 exon
chr16:31132682-31132953
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCCCTTCCTCCCTGGGCAGCTC
3' ss Score
10.43
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GAGCGGAAGGGGCAGAAG
Seq A exon
CTCCCTGCGGTGTGGCCCCCCAAGCACGCATCACAGGTGGCAGCAGTGCAGTCGCCGGTCAGTGGCCCTGGCAGGTCAGCATCACCTATGAAGGCGTCCATGTGTGTGGTGGCTCTCTCGTGTCTGAGCAGTGGGTGCTGTCAGCTGCTCACTGCTTCCCCAG
Seq C2 exon
CGAGCACCACAAGGAAGCCTATGAGGTCAAGCTGGGGGCCCACCAGCTAGACTCCTACTCCGAGGACGCCAAGGTCAGCACCCTGAAGGACATCATCCCCCACCCCAGCTACCTCCAGGAGGGCTCCCAGGGCGACATTGCACTCCTCCAACTCAGCAGACCCATCACCTTCTCCCGCTACATCCGGCCCATCTGCCTCCCTGCAGCCAACGCCTCCTTCCCCAACGGCCTCCACTGCACTGTCACTGGCTGGGGTCATGTGGCCCCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000052344-'2-6,'2-3,6-6
Average complexity
S
Mappability confidence:
91%=100=83%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(91.7=80.0),PF0008921=Trypsin=PU(0.9=1.8)
C2:
PF0008921=Trypsin=PD(6.2=5.4),PF0008921=Trypsin=FE(50.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCGGAAGGGGCAGAAG
R:
GTTGGGGAAGGAGGCGTTG
Band lengths:
244-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains