MmuEX0037459 @ mm9
Exon Skipping
Gene
ENSMUSG00000030800 | Prss8
Description
protease, serine, 8 (prostasin) [Source:MGI Symbol;Acc:MGI:1923810]
Coordinates
chr7:135070513-135073088:-
Coord C1 exon
chr7:135073071-135073088
Coord A exon
chr7:135071323-135071485
Coord C2 exon
chr7:135070513-135070784
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTTCCCCTGGGCAGCCT
3' ss Score
8.19
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GAGCTGACGGGACTGAAG
Seq A exon
CCTCCTGTGGTGCCGTCATCCAGCCACGCATCACCGGTGGTGGCAGTGCAAAGCCCGGTCAGTGGCCCTGGCAGGTCAGCATCACCTACGATGGCAACCATGTTTGTGGCGGGTCGCTCGTGTCAAATAAATGGGTGGTGTCTGCTGCTCACTGCTTCCCCAG
Seq C2 exon
AGAACACAGCAGGGAAGCGTATGAGGTGAAGCTGGGGGCCCACCAGCTAGACTCCTACAGCAATGACACTGTGGTCCACACAGTGGCTCAGATCATCACCCACTCAAGCTACCGAGAAGAGGGCTCCCAGGGGGACATCGCGCTCATCCGCCTCAGCAGTCCTGTCACCTTCTCCCGCTACATCAGACCCATCTGCCTCCCTGCAGCCAATGCCTCCTTTCCCAACGGCCTTCACTGTACTGTCACGGGATGGGGTCATGTGGCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030800_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.6=80.0)
C2:
PF0008921=Trypsin=FE(38.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGACGGGACTGAAG
R:
TACAGTGAAGGCCGTTGGGAA
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: