MmuEX0037459 @ mm10
Exon Skipping
Gene
ENSMUSG00000030800 | Prss8
Description
protease, serine 8 (prostasin) [Source:MGI Symbol;Acc:MGI:1923810]
Coordinates
chr7:127926999-127929574:-
Coord C1 exon
chr7:127929557-127929574
Coord A exon
chr7:127927809-127927971
Coord C2 exon
chr7:127926999-127927270
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTCCCCCTTCCCCTGGGCAGCCT
3' ss Score
8.19
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GAGCTGACGGGACTGAAG
Seq A exon
CCTCCTGTGGTGCCGTCATCCAGCCACGCATCACCGGTGGTGGCAGTGCAAAGCCCGGTCAGTGGCCCTGGCAGGTCAGCATCACCTACGATGGCAACCATGTTTGTGGCGGGTCGCTCGTGTCAAATAAATGGGTGGTGTCTGCTGCTCACTGCTTCCCCAG
Seq C2 exon
AGAACACAGCAGGGAAGCGTATGAGGTGAAGCTGGGGGCCCACCAGCTAGACTCCTACAGCAATGACACTGTGGTCCACACAGTGGCTCAGATCATCACCCACTCAAGCTACCGAGAAGAGGGCTCCCAGGGGGACATCGCGCTCATCCGCCTCAGCAGTCCTGTCACCTTCTCCCGCTACATCAGACCCATCTGCCTCCCTGCAGCCAATGCCTCCTTTCCCAACGGCCTTCACTGTACTGTCACGGGATGGGGTCATGTGGCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030800-'3-4,'3-3,9-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.047
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.6=80.0)
C2:
PF0008921=Trypsin=FE(38.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGACGGGACTGAAG
R:
TACAGTGAAGGCCGTTGGGAA
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types