RnoEX0070390 @ rn6
Exon Skipping
Gene
ENSRNOG00000019616 | Prss8
Description
serine protease 8 [Source:RGD Symbol;Acc:619973]
Coordinates
chr1:199374152-199376523:-
Coord C1 exon
chr1:199376506-199376523
Coord A exon
chr1:199374908-199375070
Coord C2 exon
chr1:199374152-199374423
Length
163 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTTTCCCTGAGCAGCTT
3' ss Score
8.41
5' ss Seq
CAGGTACCA
5' ss Score
7.88
Exon sequences
Seq C1 exon
GAGCTGATGGGACTGAAG
Seq A exon
CTTCCTGTGGTGCAGTCATCCAGCCACGCATCACAGGTGGTGGCAGTGCGAAGCCTGGTCAATGGCCCTGGCAGGTCAGCATCACCTACAATGGCGTCCACGTTTGTGGTGGGTCTCTCGTGTCAAATCAATGGGTGGTGTCAGCTGCTCACTGCTTCCCCAG
Seq C2 exon
AGAACACAGCAAGGAAGAGTATGAGGTAAAGCTGGGGGCCCACCAGCTGGACTCCTTCAGCAATGACATCGTGGTCCACACAGTAGCTCAGATCATCTCCCACTCGAGCTACCGTGAGGAGGGCTCCCAGGGTGACATCGCGCTCATCCGCCTCAGCAGCCCTGTCACCTTCTCCCGCTACATCAGACCCATCTGCCTCCCTGCAGCCAATGCCTCCTTTCCCAATGGCCTCCACTGTACTGTCACAGGATGGGGTCATGTGGCTCCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019616-'1-3,'1-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008921=Trypsin=PU(18.6=80.0)
C2:
PF0008921=Trypsin=FE(38.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]