DreEX6069698 @ danRer10
Exon Skipping
Gene
ENSDARG00000036863 | MYO1D
Description
myosin ID [Source:HGNC Symbol;Acc:HGNC:7598]
Coordinates
chr12:28381652-28383700:-
Coord C1 exon
chr12:28383584-28383700
Coord A exon
chr12:28382971-28383174
Coord C2 exon
chr12:28381652-28381797
Length
204 bp
Sequences
Splice sites
3' ss Seq
GATTTATTTGATGTTTTCAGGGG
3' ss Score
7.47
5' ss Seq
AAGGTATTA
5' ss Score
7.04
Exon sequences
Seq C1 exon
TCGTCAATAAATGACAGTGCGGAATTTAAAGCTGTTGCTGATGCAATGAAAGTCATTGGATTTACTACAGAAGAGATTCAGACGGTCTACAAGATCCTGGCTACCATCTTGCATCTG
Seq A exon
GGGAATCTTAAGTTTGGAACTGATGGAGATGTGACTTTAATTGAGAACTCGAAGCTGGTGTCTGTGTTGGGGGATTTGCTTTCCACCAAAGAGGAGAATGTAGAGAAGGCCATGCTCTATCGTACGGTAGCCACTGGCCGCGATGTCATCGACAAACAACACACTCATCAAGAGGCCAGTTATGGCCGTGATGCCTTAGCCAAG
Seq C2 exon
GCCATCTATGAGCGCCTTTTCTGCTGGATTGTGGGACGAATCAATGACATCATTGAGGTGAAAAACTACGACGCTCGAGTTCATGGTAAGAACACAGTCATTGGAGTTCTGGACATCTATGGCTTTGAGATCTTTCAGAATAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036863-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(10.0=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAATAAATGACAGTGCGGAATT
R:
CTGTTATTCTGAAAGATCTCAAAGCC
Band lengths:
260-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]