RnoEX0057315 @ rn6
Exon Skipping
Gene
ENSRNOG00000003276 | Myo1d
Description
myosin ID [Source:RGD Symbol;Acc:621321]
Coordinates
chr10:68048109-68050209:-
Coord C1 exon
chr10:68050093-68050209
Coord A exon
chr10:68049335-68049538
Coord C2 exon
chr10:68048109-68048254
Length
204 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCGCTTTTGATATAGGGA
3' ss Score
8.01
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCTTCCATCAATGATGCTGCAGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACAGTGTATAAAATTCTGGCTGCTATTCTTCACTTG
Seq A exon
GGAAATTTAAAATTTATAGTAGATGGTGACACGCCACTTATTGAGAATGGCAAAGTTGTATCTGTCATAGCAGAATTGCTCTCAACCAAGGCAGACATGGTGGAGAAAGCCCTGCTTTACCGGACGGTGGCCACAGGCCGTGACATCATTGACAAACAGCACACGGAACAGGAGGCTAGCTACGGCAGAGACGCCTTTGCCAAG
Seq C2 exon
GCAATATATGAGCGCCTCTTTTGTTGGATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTACGACACCACAGTACATGGGAAAAACACAGTTATTGGCGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003276_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.003 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(11.2=100)
A:
PF0006316=Myosin_head=FE(10.0=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATCAATGATGCTGCAGAGT
R:
TGTTGTTGTCAAAGATTTCAAAGCCA
Band lengths:
260-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]