MmuEX6088152 @ mm9
Exon Skipping
Gene
ENSMUSG00000035441 | Myo1d
Description
myosin ID [Source:MGI Symbol;Acc:MGI:107728]
Coordinates
chr11:80488319-80490440:-
Coord C1 exon
chr11:80490324-80490440
Coord A exon
chr11:80489553-80489756
Coord C2 exon
chr11:80488319-80488464
Length
204 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTGTCTTTGACATAGGGA
3' ss Score
7.96
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
TCTTCCATCAATGACGCTGCTGAGTTCAAAGTTGTAGCTGATGCCATGAAAGTAATTGGATTCAAACCTGAGGAGATTCAAACTGTGTATAAAATTTTGGCTGTTATTCTTCACTTG
Seq A exon
GGAAATTTAAAATTTATAGTAGATGGTGACACGCCGCTTATTGAGAATGGCAAGGTTGTGTCTGTCATAGCAGAATTGCTGTCTACTAAGGCAGACATGGTGGAGAAAGCCCTGCTTTACCGGACGGTGGCCACAGGCCGTGACATCATCGACAAACAGCACACGGAACAGGAGGCCAGCTACGGCAGAGACGCCTTTGCCAAG
Seq C2 exon
GCAATATATGAGCGCCTCTTTTGTTGGATTGTTACTCGCATCAATGACATCATCGAGGTCAAGAACTATGACACCACGATACATGGGAAAAACACGGTTATTGGTGTCTTGGATATCTATGGCTTTGAAATCTTTGACAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035441-'6-10,'6-9,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(10.0=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCATCAATGACGCTGCTGA
R:
TGTTGTTGTCAAAGATTTCAAAGCCA
Band lengths:
260-464
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: