GgaEX6027161 @ galGal3
Exon Skipping
Gene
ENSGALG00000000674 | MYO1D
Description
NA
Coordinates
chr27:1398560-1399728:+
Coord C1 exon
chr27:1398560-1398676
Coord A exon
chr27:1398971-1399174
Coord C2 exon
chr27:1399583-1399728
Length
204 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGCTACTTCCTGCAGGGG
3' ss Score
8.92
5' ss Seq
AAAGTGAGC
5' ss Score
5.89
Exon sequences
Seq C1 exon
GGTTCCATCAACGATGGTGCCGAGTTCAAGGCTGTGGCTGATGCCATGAAGGTGATAGGATTCAAGCAAGAGGAGATTCAGACTGTCTACAAAATCGTGGCAGCCATTCTTCATTTG
Seq A exon
GGGAACTTGAAGTTTTCCGTGGATGGCGATACGCCTCTGATAGAGAACAGCAAGGCTGTGTCCATCATTGCAGACCTACTGTCAACAAAATCTGAGATGGTGGAGAAGGCCCTTTTGTTCCGGACTGTCGCTACGGGCCGGGATGTCATCGACAAGCAGCACACCGAGCAAGAAGCCACCTATGGCAGAGATGCCTTTGCAAAA
Seq C2 exon
GCTATTTATGAGCGCCTCTTCTGTTGGATTGTGACACACATCAACGATGTGATTGAGGTGAAGAACTACGACACGACAGTGCACGGGAAGAACACGGTCATTGGCGTCCTGGATATCTATGGCTTTGAGATATTTGACAACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000674-'7-12,'7-11,8-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.6=100)
A:
PF0006316=Myosin_head=FE(13.5=100)
C2:
PF0006316=Myosin_head=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAACGATGGTGCCGAGTTC
R:
TGTTGTTGTCAAATATCTCAAAGCCA
Band lengths:
256-460
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]