DreEX6070640 @ danRer10
Exon Skipping
Gene
ENSDARG00000074041 | abca5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:ZFIN;Acc:ZDB-GENE-050517-5]
Coordinates
chr12:38658063-38659841:+
Coord C1 exon
chr12:38658063-38658173
Coord A exon
chr12:38658300-38658475
Coord C2 exon
chr12:38659722-38659841
Length
176 bp
Sequences
Splice sites
3' ss Seq
TGTCTTATGTTTACCCATAGGCA
3' ss Score
10.59
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
GGTTGACCTTTGACATCTATGAGGGTCAAATCACAGCCCTGCTGGGTCACAGTGGAGCAGGAAAATCTACCCTGATGAACATCCTGTGTGGTATTTGCCCTCCTACGGAAG
Seq A exon
GCACAGCCACCATCTATGGCTCTCCAGTGGCAGAGATCGCAGAGGGGGCTGAGATGAAGCAGCTGGTTGGTATTTGCCCCCAGTTCAACATAATCTTTGATGTGCTCACCGTAGAGGAACACCTGAGGATCTTTGCCGCCATCAAAGGGATCCTGCCCTCTGATATTGACGGTGAG
Seq C2 exon
GTAAGGAAAGTTCTAAAGGATCTGGATTTGGAAAAGATTATGGATGCTCTGGCAAAAAACCTCAGTGGAGGCCAGAAGAGGAAGCTCTCTGTGGGCATAGCCATTCTTGGAGATCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074041-'14-17,'14-16,16-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGACCTTTGACATCTATGAGGG
R:
GCTATGCCCACAGAGAGCTTC
Band lengths:
212-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]