RnoEX6050327 @ rn6
Exon Skipping
Gene
ENSRNOG00000046890 | Abca6
Description
ATP binding cassette subfamily A member 6 [Source:RGD Symbol;Acc:1308998]
Coordinates
chr10:98519720-98520671:-
Coord C1 exon
chr10:98520561-98520671
Coord A exon
chr10:98520044-98520219
Coord C2 exon
chr10:98519720-98519839
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTTTAATTTCTCCTTTTTAGGGT
3' ss Score
12.21
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
GCTTGTTCTTCGATGTCTATGAGAGTCAAATCACAGCAGTTCTGGGCCATGGTGGAGCAGGCAAATCTTCATTGCTAAACATCCTCAATGGACTGTCTGTTCCAACTTCAG
Seq A exon
GGTTAGCCACGGTGTACAATAAAAATCTCTCTGAGATGCAAGACTTGAAGGAAATCAGAAAGATGATTGGTGTTTGTCCTCAACATAATGTGCAATTTGATGCGCTCACTGTGAAGGAGAACCTTACCCTCTTCGCTAATATAAAAGGGATCGTTCCGCAGAGCGTAGCGCAAGAG
Seq C2 exon
GTACAACAAATCCTGTCGGAGTTGGACATGCAGACGATCCAGGATGAACTGGCTGAACATTTAAGTGAAGGACAGAAAAGAAAGCTCACCTTTGGCGTGGCCATTCTAGGAGACCCTCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046890-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTTCTTCGATGTCTATGAGAGT
R:
AGGGTCTCCTAGAATGGCCAC
Band lengths:
228-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]