MmuEX6090875 @ mm9
Exon Skipping
Gene
ENSMUSG00000044749 | Abca6
Description
ATP-binding cassette, sub-family A (ABC1), member 6 [Source:MGI Symbol;Acc:MGI:1923434]
Coordinates
chr11:110080528-110081502:-
Coord C1 exon
chr11:110081392-110081502
Coord A exon
chr11:110080854-110081029
Coord C2 exon
chr11:110080528-110080647
Length
176 bp
Sequences
Splice sites
3' ss Seq
TTATAATTTTTCCTTTTTAGGGT
3' ss Score
12.42
5' ss Seq
GAGGTTGGC
5' ss Score
3.55
Exon sequences
Seq C1 exon
GCTTGTTCTTGGATATCTATGAGAGTCAAATCACAGCAATTCTGGGCCACAGTGGAGCGGGCAAATCTTCATTACTAAACATCCTCAGTGGATTGTATGTTCCAACTGCAG
Seq A exon
GGTCAGTCACAGTCTACAATAAAAATCTCTCTGATATGCAAGACTTGAAGGAAATCAGGAAGGCGATTGGTGTTTGTCCTCAACATAACGTTCAATTTGATGCACTCACTGTGAAGGAAAACCTCACTCTCTTTGCTAAAATAAAAGGGATTCTTCCACAGGACGTAGAGCAAGAG
Seq C2 exon
GTACAACAAATCTTATCAGAATTGGACATGCAGAATATTCGGGACGATCTAGCCGAACATTTAAGCGAAGGACAGAAGAGAAAGCTCACTTTTGGCATTGCCACTGTAGGAGATCCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044749-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTGTTCTTGGATATCTATGAGAGT
R:
GGATCTCCTACAGTGGCAATGC
Band lengths:
227-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: