DreEX6071884 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7276153-7277489:-
Coord C1 exon
chr19:7277436-7277489
Coord A exon
chr19:7276912-7276956
Coord C2 exon
chr19:7276153-7276206
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCTCCATTTTGTTTTGCCAGGGT
3' ss Score
8
5' ss Seq
TTAGTAAGT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GGACCCCGTGGTTTGTTGGGGCCTAAAGGGCCTTCTGGACTTCCTGGACCTCCT
Seq A exon
GGTGTTCGTGGAAATGATGGTCCACATGGTCCAAAAGGAAACTTA
Seq C2 exon
GGACCACAAGGAGAGCCCGGTCCTCCAGGCCAGCAGGGGGCTCCAGGAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422-'27-26,'27-25,28-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.9=100)
A:
PF0139113=Collagen=FE(15.6=100)
C2:
PF0139113=Collagen=PU(14.3=61.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTGGTTTGTTGGGGCCTAAA
R:
GTGTTCCTGGAGCCCCCT
Band lengths:
100-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]