BtaEX6096812 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7304549-7305232:-
Coord C1 exon
chr23:7305179-7305232
Coord A exon
chr23:7304799-7304843
Coord C2 exon
chr23:7304549-7304602
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACGCCCCTCTCATGTTTCAGGGA
3' ss Score
10.83
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGACCTCGAGGTCTCCTTGGCCCCAAAGGCCCTCCTGGGATTCCTGGACCCCCG
Seq A exon
GGAGTCCGAGGCATGGATGGCCCCCACGGTCCCAAAGGCAGCTTG
Seq C2 exon
GGACCCCAGGGAGAACCAGGACCTCCGGGACAGCAGGGCACCCCCGGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'23-24,'23-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.2=100)
A:
PF0139113=Collagen=FE(16.7=100)
C2:
PF0139113=Collagen=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGGTCTCCTTGGCCC
R:
GGAGGTCCTGGTTCTCCCTG
Band lengths:
76-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]