MmuEX6077020 @ mm9
Exon Skipping
Gene
ENSMUSG00000024330 | Col11a2
Description
collagen, type XI, alpha 2 [Source:MGI Symbol;Acc:MGI:88447]
Coordinates
chr17:34189409-34190192:+
Coord C1 exon
chr17:34189409-34189462
Coord A exon
chr17:34189886-34189930
Coord C2 exon
chr17:34190139-34190192
Length
45 bp
Sequences
Splice sites
3' ss Seq
TACCCAGCCTTGTGTTTCAGGGA
3' ss Score
7.59
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGACCTAGAGGACTCCTTGGCCCTAAAGGCCCGCCTGGTATTCCTGGGCCGCCG
Seq A exon
GGAGTCCGAGGCATGGACGGTCCCCACGGCCCCAAAGGGAGCTTG
Seq C2 exon
GGACCTCAAGGAGAGCCAGGACCTCCTGGACAACAGGGTACTCCTGGGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024330-'23-25,'23-24,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.5=100),PF0139113=Collagen=PU(2.2=11.1)
A:
PF0139113=Collagen=FE(16.1=100),PF0139113=Collagen=FE(15.2=100)
C2:
PF0139113=Collagen=FE(19.5=100),PF0139113=Collagen=FE(18.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTAGAGGACTCCTTGGC
R:
TGGGCCCCAGGAGTACCC
Band lengths:
107-152
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: