HsaEX6046556 @ hg19
Exon Skipping
Gene
ENSG00000204248 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:2187]
Coordinates
chr6:33145189-33145962:-
Coord C1 exon
chr6:33145909-33145962
Coord A exon
chr6:33145439-33145483
Coord C2 exon
chr6:33145189-33145242
Length
45 bp
Sequences
Splice sites
3' ss Seq
ACACCCATCTTGTGTTTCAGGGC
3' ss Score
10.82
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
GGACCTCGAGGTCTCCTTGGCCCCAAAGGCCCACCTGGTATTCCTGGACCCCCT
Seq A exon
GGCGTCCGAGGCATGGATGGTCCCCAGGGCCCCAAAGGGAGCTTG
Seq C2 exon
GGACCCCAGGGAGAGCCAGGACCTCCTGGACAACAGGGCACCCCTGGGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204248-'21-23,'21-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.987 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(20.0=100)
A:
PF0139113=Collagen=FE(16.1=100),PF0139113=Collagen=PU(13.1=73.3)
C2:
PF0139113=Collagen=FE(19.5=100),PF0139113=Collagen=FE(20.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGAGGTCTCCTTGGCCC
R:
GGGTGCCCTGTTGTCCAG
Band lengths:
93-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)