Special

DreEX6072645 @ danRer10

Exon Skipping

Gene
Description
Kruppel-like factor 2b [Source:ZFIN;Acc:ZDB-GENE-011109-2]
Coordinates
chr19:17832518-17838270:+
Coord C1 exon
chr19:17832518-17832839
Coord A exon
chr19:17834324-17835170
Coord C2 exon
chr19:17835814-17838270
Length
847 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTTGTTTTTTCAGAGA
3' ss Score
10.23
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
GCACTGAGAAACGAGAAGCGCTGGAGAGAGCGCACTGTGCCTTATATATAGACTATCTTTGGGAACTCTGAACGCGGTTTCCACCGCGCACACAATTGGTCTAGGAGCCGTATTTATTAAGTAGGAGGCGCTCCTGCCGGGCAAACTTTGTTCATGACTGTGGAAGTTCACTCGAGGAAAAAGCGCGCAGAAGTTTGACATCTCTTCAGGAGCAAGTGCATTAATACTGAATACACACCGAGCACGCGTGGACATGGCTTTACCTTGCCTTTTGCCTTCGATTTCAACGTTTGCAAACCAGAAGGAGAAGCTCTGGGAGGAT
Seq A exon
AGATGGAAGATTGAGGAGCACAAACCACTGAACGCCAGCTGCCCTCCGCTCAACGTGGCACTGAACACAGACACTTGTCGAGGCCGTAAGGATGACGAGGATCTCAGCAATTATTTAGACCTGGAGTTTATCCTGGCCAACACCACGGGCCCTCTGGAGGCCGGAGCCGAGTTCATCTCCCACTCCGAGCCATGCGGCATGTACTCCACTGCAGTTTACTCATCTCCAGAAGCACCTCCACCATACGGCCTCATGGCAGAGCTCCTGCGATCTGATGTAGACTCCACGTATGACACCACAGTGCAGGGGAGATTCCTGCTCAACTCCAGCGGCTTCCCCAGACAGGAGTTTCCTGAAATCAAAGTGGAGCCGCCGATGGATGGCTACGGTCCGGTGATAGGCATGGTGCCACAAACCTGCCAAAAAATCAAGCAGGAAGGCAACGTTTCATGCATGATGTCTTTCGAGCAGCCCAGACTAGCAGTTTCTCCGCAGGCCACCGGGAATATGACTCCTCCGCTGAGTCCTGACGACTCCCACCTCCGTCAAACGACATATACACAGAGCTACCATCACTCTCCTCCGGCGTATCCGCAGGTGCCAATGCAGTTCACCGCGCCACACCAGTTTGCCATGTATGAGGAGGCAATGGGGATGCAACCCAGCATGCAGCGGGCTCTTCTCACTCCTCCGTCCTCTCCGTTAGAGCTAATGGAGTCTAAACCCAAGCGAGGGCGACGCACCTGGCCGAGGAAGCGCATGGCGACACATACATGCACATACGCCGGCTGCGGGAAGACGTACACCAAAAGCTCCCATTTAAAAGCGCATCACCGCACTCACACCG
Seq C2 exon
GTGAAAAACCATACCACTGCAACTGGGAGGGATGCGGATGGAAGTTCGCCCGTTCTGACGAGCTGACGCGTCACTTCCGTAAACACACGGGCCACCGGCCGTTCCAGTGCCACCTGTGTGAACGTGCCTTCTCCCGCTCCGACCACCTGGCGCTGCACATGAAGAGACACCTGTGAGGGCCGGATCCACCACAACTGCCTTATTTAATGACTCTTATTATATATATATCATCATACTTTTATAACAAAGTAGCTGGTACTACATAGATCACGCAGAGCTCTTTTTAAGGCCTTTTTTTGGGGTTAAAAAGCATCCTGAAAGGCTGGTCCTACGAATCGGTGTCCAATCCGGAGACTGTTATGTTGAATTAACGATGCCACAACGAGTGCAAAGCCTGACGACTAGCAAACCAAAGTGGAAAATGCACAACGATGTTGACAATGTTTTGCTCGAAACTGCCATGCAACAAATGTGTTTCATTTTTACCAGGGCTGGGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040432-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.399 C2=0.069
Domain overlap (PFAM):

C1:
NO
A:
PF134651=zf-H2C2_2=PU(35.7=3.5)
C2:
PF134651=zf-H2C2_2=PD(60.7=28.8),PF134651=zf-H2C2_2=WD(100=44.1)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAGAAACGAGAAGCGCTG
R:
CTCCCAGTTGCAGTGGTATGG
Band lengths:
349-1196
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]