RnoEX0047287 @ rn6
Exon Skipping
Gene
ENSRNOG00000014205 | Klf2
Description
Kruppel-like factor 2 [Source:RGD Symbol;Acc:1359220]
Coordinates
chr16:19223087-19225037:-
Coord C1 exon
chr16:19224966-19225037
Coord A exon
chr16:19223830-19224637
Coord C2 exon
chr16:19223087-19223262
Length
808 bp
Sequences
Splice sites
3' ss Seq
CCGCGCCCTGTCTCCTGCAGCGC
3' ss Score
10.96
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
ATGGCGCTCAGCGAGCCTATCTTGCCGTCCTTTGCCACTTTCGCCAGCCCCTGCGAGCGCGGCCTCCAGGAG
Seq A exon
CGCTGGCCGCGAAATGAGCCCGAGGCGGGCAGCACGGATGAGGACCTAAACAGCGTGCTGGACTTCATCCTGTCCATGGGACTGGACGGCCTGGGCGCCGAGAACCCTCCCGAGCCCCCACCGCAGCCCCCGCCTCCTGCGTTCTACTACCCGGAGCCGGGTGCCCCTCCGCCCTATGGCACCCCGGCGGCTGGCCTGGGAACGGAGCTGCTGCGCCCGGATCTGGATGCGCCTCAGGGGCCGGCTCTACACGGCCGCTTCCTCCTCGCGCCTCCCGGGCGGCTGGTGAAAGCCGAGCCCCCGGAGGTGGACGGCGGCGGCTACGGGTGCGCAGCCGGCTTGGCTCGCGGACCGCGCGGGCTGAAGCTCGAGGGCGCCCTGGGAGCGACAGGTGCATGCATGCGGGGTCCTGCTGGCCGTCCCCCACCGCCCTCCGACACGCCGCCGCTCAGCCCCGACGGCCCCCCGCGCCTCCCGGCGCCCGGTCCCCGCAACCCGTTCCCGCCACCCTTCGGCCCCGGCCCCAGCTTCGGCGGCCCCGGCCCCGCGTTGCACTACGGGCCGCCCGCTCCCGGCGCTTTCGGTCTCTTCGACGACGCGGCGGCGGCTCTGGGTCTTGCTCCCCCTGCCACGCGCGGTCTCCTCACGCCGCCCTCGTCCCCGCTGGAGCTGTTGGAGGCCAAGCCCAAGCGCGGCCGCCGCTCCTGGCCCCGCAAGCGCGCCGCCACGCACACTTGCAGCTACACCAACTGCGGCAAGACCTACACCAAGAGTTCGCACCTAAAGGCGCATCTGAGGACGCACACAG
Seq C2 exon
GTGAGAAGCCTTATCATTGCAACTGGGACGGCTGCGGCTGGAAGTTCGCGCGCTCTGACGAGCTTACCCGCCACTACCGCAAGCACACGGGTCACAGGCCCTTCCAGTGCCACTTGTGCGACCGGGCCTTCTCCAGGTCCGACCACCTGGCTCTGCACATGAAGCGACACATGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014205-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=0.807 C2=0.052
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PU(35.7=3.7)
C2:
PF134651=zf-H2C2_2=PD(60.7=28.8),PF134651=zf-H2C2_2=WD(100=44.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGCCTATCTTGCCGTC
R:
CTACATGTGTCGCTTCATGTGC
Band lengths:
238-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]