GgaEX1032345 @ galGal3
Exon Skipping
Gene
ENSGALG00000003939 | KLF2
Description
NA
Coordinates
chr28:3941787-3943745:-
Coord C1 exon
chr28:3943671-3943745
Coord A exon
chr28:3942658-3943549
Coord C2 exon
chr28:3941787-3942312
Length
892 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTTTCTTCCCCCAGAGG
3' ss Score
11.87
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATGGCGCTGAGCGATACCATCCTGCCCTCCTTCGCCACCTTCGCCAGTCCCTGCCGCGAGAAAGCGCTCCACGAA
Seq A exon
AGGTGGAAGTGCGAGCAGGAGGCCAAGGCCCCCGGCGGCACCTGGGGCGACCTCTCCCCACGCAAAGAGGATGAAGACCTCAACAACGTGCTGGATTTTATCCTTTCCATGGGCAGCGACGGCTACGGCCAAGGGGCTGCCGGCGGGGACTATCCCCCCGCGCAAGGGGAGAGCGGAGGCTTCTACCAGACAAACCCGAACCCGGGATGCTACAGTGCCCTGGAGCAGGGCAGCCCCCCGCCCTACAGCGCCGGCATCGCTCCCGAGATGATCCGCCCTGAGATGGACTCCAACTACTGCCCGGCCGGCAGCGTGCACGGGCGCTTCTTCGTGACGCCCAGCTTCGGGGCTCCGCAGTTCGTGGACAGCATCAAGCCCGAGCCCGACATGGACAGTTATGGGCCAGTCCTGGGTCTGGTGCCCCAGGCTTGCCCGAAGATCAAGCAGGAGGGCAGCGCGACCTGCATGATGGCCTACGAGCAGCCGCGGGTGGCCAACTCCCCACAGATCCCCGGCGCCGAAACACCACCGCTGAGCCCCGACGATCTCATGGTGAATGACTGCCACACGCAGATGATGTGCCCCTCGTCCGTGTCCTTCCAGCAGAGCTACCACCCGCCCTCCGGCTTCCACCACCCCCAGACCCACCTCCAGTACCAGAACACCTCCCAGTACGGCCTTTTCGAGGACAGCCTGCCCCTCCAGCCCTCCGCTCCCCGGGGTATGCTCACCCCTCCTTCCTCCCCGCTGGAGCTGCTGGACTCCAAGCCGAAACGAGGCCGGCGCTCCTGGCCCCGCAAGAGGACGGCCACGCACACGTGCACGTACGCGGGCTGCGGGAAGACCTACACCAAGAGCTCCCACCTGAAGGCCCACCTGCGGACACACACAG
Seq C2 exon
GTGAGAAGCCGTACCACTGCAACTGGGAGGGCTGCGGCTGGAAGTTCGCCCGCTCCGACGAGCTCACCCGCCACTACCGCAAGCACACCGGGCACCGGCCCTTCCAGTGCCACCTCTGCGACCGGGCCTTCTCCAGGTCGGACCACCTGGCCCTGCACATGAAGCGGCACATGTAGCCGCGGGGCCCACCGGACAGTGCCCGTTGTGAGCTGCTCAGGTGCAGGACGCTCCGAACCTGTAGCTGGTACTACGTGGGGAGGCGCCGGCGCTCCGGCCGCCGAGGATTGGACACAGGGAGGCCCAGCAGTCGTCTCCTGCACAGAACCTGACGAGGCGGCGTCCGCGAATCTGCCCGCGCCGGGCGGGGAGGACGGGGGGTTATTTATGCAGCTTCTGTGAAGGGTGAACTCCGTGAGGCTCCACACGGATTGTATAGAAGAAGCTGTAAATATCGTTTTTTCTGTTCCGGCTCTAACTGCCCCAAGCTTAACGAGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003939-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.523 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
PF134651=zf-H2C2_2=PU(35.7=3.4)
C2:
PF134651=zf-H2C2_2=PD(60.7=28.8),PF134651=zf-H2C2_2=WD(100=44.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATCCTGCCCTCCTTCG
R:
TCCCTGTGTCCAATCCTCGG
Band lengths:
358-1250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]