DreEX6073095 @ danRer10
Exon Skipping
Gene
ENSDARG00000036104 | MYO1G
Description
myosin IG [Source:HGNC Symbol;Acc:HGNC:13880]
Coordinates
chr19:25115186-25121795:-
Coord C1 exon
chr19:25121572-25121795
Coord A exon
chr19:25121338-25121482
Coord C2 exon
chr19:25115186-25115290
Length
145 bp
Sequences
Splice sites
3' ss Seq
TTCCACTGCTTCTTTCCTAGATG
3' ss Score
8.84
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GTTTGGCGAGGTGCATTAGCACGTATGCGATGTCGAAAAATAAGAGCAATTTATACTATAATGGGTTATTATAAATGCTATAAAGTGAAGGCTCACTTCTGGGAAGTGGAGAGACGTTTTGCTAGCGTTCGAAACATGGCAGACTATGGGAAGAGTGTGGAGTGGCCAACACCACCTGCAGCCCTGGCACAGTTCCACAGAATTACACAACACCTGTACCGCCG
Seq A exon
ATGGTGGGCAAGGCAGCTGATCAAAAACATCCCCCCATCTGACATGGCTGAGGTGAGGGCAAAAGTAGCTGCTTTTTCAGCTCTGAGCGGGGAGAGAATGGACTGGGGCTACAGCCGTTCCTGGGAGAGAGACTACTTGGCCAAT
Seq C2 exon
GCTAAAGACTCTCCTCTGATGAGCTCCAACTTTGTTCGCATCACTAAAGAGCTGAAGAACAAAGACCAGTATGGACAGGTCCTCTTCTCATCCGCTGTCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036104-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF149351=TMEM138=FE(70.5=100),PF076296=DUF1590=WD(100=22.7)
A:
PF149351=TMEM138=PD(11.4=24.5),PF060178=Myosin_TH1=PU(14.4=57.1)
C2:
PF060178=Myosin_TH1=FE(17.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACGTATGCGATGTCGAAAA
R:
TGCGAACAAAGTTGGAGCTCA
Band lengths:
246-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]