GgaEX6018198 @ galGal4
Exon Skipping
Gene
ENSGALG00000005644 | MYO1G
Description
unconventional myosin-Ig [Source:RefSeq peptide;Acc:NP_001026132]
Coordinates
chr2:4045440-4046070:+
Coord C1 exon
chr2:4045440-4045663
Coord A exon
chr2:4045748-4045892
Coord C2 exon
chr2:4045966-4046070
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCATGCCCTCACCCCACAGGTG
3' ss Score
11.9
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GCTTGGCGTGGAGCCCTGGCCCGGCGGTGGTGCCGGTACCTGCGTGCCGCCTATGCCATCATGGGCTACTACAAGCGGCACAAGGTGAAGGCATACCTGCTGGAGCTGATACGGCGCTTCCAGGGTGTGCGCTCCATGCCCGACTTTGGCAAGAGCCTGGCATGGCCAGAGCCGCCGGCTGTGCTGAGCCGCTTCCAGGAGAACAGCCAGCAGCTCTTCCGCAG
Seq A exon
GTGGCGAGCGCGGCAGATCGTCAAGAACATCCCTCCCTCCGACATGGCGCAGATTCGGGCCAAGGTGGCCGCCATGGGGGCTCTGCATGGGCTGCGGAAGGACTGGGGGTGCCAGCGTGGCTGGGTGCGCGACTACCTGTCCTCG
Seq C2 exon
GCCAGCGAGAACCCAGGCTTGGCGCTGCCCTTCGCCCACCGTGTGCAGGCCCTACGTGACAAGGTGCACTTCGGCGCTGTCCTCTTCTCCAGCCATGTCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644-'17-26,'17-25,19-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF060178=Myosin_TH1=PU(13.7=57.1)
C2:
PF060178=Myosin_TH1=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGCGGCACAAGGTGAAG
R:
ACATGGCTGGAGAAGAGGACA
Band lengths:
253-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]