MmuEX0030504 @ mm9
Exon Skipping
Gene
ENSMUSG00000020437 | Myo1g
Description
myosin IG [Source:MGI Symbol;Acc:MGI:1927091]
Coordinates
chr11:6408193-6410374:-
Coord C1 exon
chr11:6410151-6410374
Coord A exon
chr11:6409328-6409472
Coord C2 exon
chr11:6408193-6408297
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGATCCCTGTCCTCTTCAAGGTG
3' ss Score
9.28
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GCTTGGCGGGGCACCCTGGCTAGGTGGCACTGCCGGCGACTAAGGGCCATCTACACCATCATGCGCTGGTTCCGGAGGCACAAGGTGCGTGCTCACCTGATTGAACTACAGCGCCGGTTCCAGGCTGCACGGCAGCCCCCACTCTATGGCCGTGACCTTGTGTGGCCCACACCTCCTGCTGTGCTGCAGCCCTTCCAGGACACTTGCCGTGTTCTCTTCAGCAG
Seq A exon
GTGGCGGGCACGGCAGTTAGTGAAGAACATCCCTCCTTCAGACATGATCCAGATCAAGGCCAAGGTGGCTGCTATGGGGGCCTTGCAAGGATTGCGGCAGGACTGGGGTTGCCAGCGGGCCTGGGCCCGAGACTACCTGTCCTCT
Seq C2 exon
GACACTGACAACCCCACAGCTTCCCATCTGTTTGCTGAGCAACTAAAGGCACTTCGGGAGAAAGATGGCTTTGGCTCTGTGCTTTTCTCCAGCCATGTGCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020437_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF060178=Myosin_TH1=PU(13.7=57.1)
C2:
PF060178=Myosin_TH1=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACACCATCATGCGCTGGTT
R:
CCATCTTTCTCCCGAAGTGCC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: