GgaEX6018198 @ galGal3
Exon Skipping
Gene
ENSGALG00000005644 | MYO1G
Description
NA
Coordinates
chr2:3962156-3962786:+
Coord C1 exon
chr2:3962156-3962379
Coord A exon
chr2:3962464-3962608
Coord C2 exon
chr2:3962682-3962786
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTCATGCCCTCACCCCACAGGTG
3' ss Score
11.9
5' ss Seq
TCGGTAAGG
5' ss Score
10.48
Exon sequences
Seq C1 exon
GCTTGGCGTGGAGCCCTGGCCCGGCGGTGGTGCCGGTACCTGCGTGCCGCCTATGCCATCATGGGCTACTACAAGCGGCACAAGGTGAAGGCATACCTGCTGGAGCTGATACGGCGCTTCCAGGGTGTGCGCTCCATGCCCGACTTTGGCAAGAGCCTGGCATGGCCAGAGCCGCCGGCTGTGCTGAGCCGCTTCCAGGAGAACAGCCAGCAGCTCTTCCGCAG
Seq A exon
GTGGCGAGCGCGGCAGATCGTCAAGAACATCCCTCCCTCCGACATGGCGCAGATTCGGGCCAAGGGGGGCGCCATGGGGGCTCTGCATGGGCTGCGGAAGGACTGGGGGTGCCAGCGTGGCTGGGTGCGCGACTACCTGTCCTCG
Seq C2 exon
GCCAGCGAGAACCCAGGCTTGGCGCTGCCCTTCGCCCACCGTGTGCAGGCCCTACGTGACAAGGTGCACTTCGGCGCTGTCCTCTTCTCCAGCCATGTCCGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005644-'21-20,'21-19,22-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF060178=Myosin_TH1=PU(13.8=57.1)
C2:
PF060178=Myosin_TH1=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAAGCGGCACAAGGTGAAG
R:
ACATGGCTGGAGAAGAGGACA
Band lengths:
253-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]