DreEX6073817 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36597996-36625320:-
Coord C1 exon
chr19:36625207-36625320
Coord A exon
chr19:36604200-36604388
Coord C2 exon
chr19:36597996-36598142
Length
189 bp
Sequences
Splice sites
3' ss Seq
CTTGTCTGCTTTCCTCACAGTTA
3' ss Score
10.17
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GTGATATTGTGCGTTACAGATGTTTGCCAGGATATCATCTTAATGGAAACAGCATTCAAACCTGTCGCCTCGGGACGCATCTCGAGTTTGATGGACCTCCACCTTCCTGTGATA
Seq A exon
TTACCTGTCCCATGAACGAGGTGCTGACGGCCTCTACAGGGGTGATCCTTAGTCAGTCTCCGGGCAGCAGCCTGCCACACTTTGAGTCCTGCTCCTGGTTGGTGAAGGTGGATTCGGGCTACAACATCACTTTCACTGTTGAACATTTTCAGACCAGCAGGCAGTTTGATGAGCTGGAAATATTTGATG
Seq C2 exon
GTCCGTCAAGACAGAGTCCACTGCTCATTTCTCTGAGTGGGAATTATTCTTCTCCTCTCAGCATTACTAGCTCTGCAAACAAGGTTTACCTGCACTGGTCCTTTGATCACACCTCCAGCCACAAGGGCTTTCGAATCCGCTACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'54-55,'54-54,55-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(62.1=92.3)
A:
PF0043115=CUB=PU(56.0=95.3)
C2:
PF0043115=CUB=PD(43.1=94.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTTACAGATGTTTGCCAGG
R:
GAGTAGCGGATTCGAAAGCCC
Band lengths:
249-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]