RnoEX6023418 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146682817-146687282:+
Coord C1 exon
chr5:146682817-146682930
Coord A exon
chr5:146684791-146684979
Coord C2 exon
chr5:146687136-146687282
Length
189 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTCTCTCTCCCAGTGC
3' ss Score
11.63
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTGACATCGTCCGCTACAGGTGCCTTCCAGGCTTTACCTTAGTGGGGAGTGAAATCCTCACCTGCAAGCTGGGAACCTACCTGCAGTTCGAAGGCCCACCCCCAATATGTGAAG
Seq A exon
TGCACTGCCCAACCAATGAGCTTCTGACAGACTCCACTGGTGTGATCCTTAGCCAGAGCTATCCCGGAAGCTACCCACAGTTCCAGACCTGCTCCTGGCTGGTGAGAGTGGAGCCAGAGTACAATGTCTCTATCACGGTGGAGTACTTCCTCAGCGAGAAGCAATATGATGAGTTTGAAATCTTTGACG
Seq C2 exon
GTCCCTCAGGACAAAGTCCTCTGCTGAAAGCTCTCAGTGGGAATTACTCGGCCCCCCTGATTGTCACCAGCTCCAGCAACTCTGTGTACCTGCGCTGGTCATCTGACCACGCCTATAACCGGAAGGGTTTTAAGATTCGGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057-'54-65,'54-64,55-65=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(62.1=92.3)
A:
PF0043115=CUB=PU(56.0=95.3)
C2:
PF0043115=CUB=PD(43.1=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCGTCCGCTACAGGT
R:
ACCCTTCCGGTTATAGGCGTG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]