MmuEX6096197 @ mm10
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128509073-128513525:+
Coord C1 exon
chr4:128509073-128509186
Coord A exon
chr4:128510889-128511077
Coord C2 exon
chr4:128513379-128513525
Length
189 bp
Sequences
Splice sites
3' ss Seq
AGTGTCTCTCTTTCTTCCAGTGC
3' ss Score
10
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTGACATCGTCCGCTACAGGTGCCTCCCAGGCTTTACCTTAGTGGGGAGTGAAATCCTGACCTGCAAGCTGGGAACCTACCTGCAGTTTGAAGGTCCACCCCCAATATGCGAAG
Seq A exon
TGCACTGCCCGACCAATGAGCTTCTGACAGACTCCACTGGAGTGATCCTTAGCCAGAGCTATCCCGGAAGCTACCCACAGTTCCAGACCTGCTCCTGGCTGGTGAGGGTTGAGCCAGAGTACAATATCTCGATCACGGTGGAGTACTTCCTTAGCGAGAAGCAGTATGATGAATTTGAGATCTTTGACG
Seq C2 exon
GTCCCTCAGGGCAAAGTCCTCTACTGAAAGCTCTCAGTGGGAATTACTCGGCTCCCTTGATTGTCACCAGCTCAAGCAACTCTGTGTACCTGCGCTGGTCATCTGACCACGCCTATAACCGGAAGGGTTTTAAGATTCGGTATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804-'57-67,'57-59,61-67=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PD(62.1=92.3)
A:
PF0043115=CUB=PU(56.0=95.3)
C2:
PF0043115=CUB=PD(43.1=94.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACATCGTCCGCTACAGGT
R:
ACCCTTCCGGTTATAGGCGTG
Band lengths:
242-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types