DreEX6074026 @ danRer10
Exon Skipping
Gene
ENSDARG00000020007 | col1a2
Description
collagen, type I, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-030131-8415]
Coordinates
chr19:41402783-41403394:+
Coord C1 exon
chr19:41402783-41402836
Coord A exon
chr19:41403165-41403263
Coord C2 exon
chr19:41403350-41403394
Length
99 bp
Sequences
Splice sites
3' ss Seq
AAGTCTTCAATGTTTGACAGGGA
3' ss Score
4.26
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGACCTTTGGGCTCAGCTGGTCCTCCTGGTTTCCCTGGTGCACCTGGACCCAAG
Seq A exon
GGAGAACTTGGACCCGCTGGTCCCACTGGACCATCTGGAGCTCAGGGACAAAGAGGAGAGCCAGGCCCGAACGGTGCCGTTGGCCCCGTTGGACCCCCT
Seq C2 exon
GGTAACCCTGGTGCTAATGGTATCAATGGTGCTAAAGGAGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020007-'20-16,'20-15,21-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.8=100),PF0139113=Collagen=PU(18.7=77.8)
A:
PF0139113=Collagen=PD(14.1=33.3),PF0139113=Collagen=FE(42.7=100)
C2:
PF0139113=Collagen=FE(18.7=100),PF0139113=Collagen=PU(9.1=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCTTTGGGCTCAGCTG
R:
AGCACCATTGATACCATTAGCACC
Band lengths:
87-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]