MmuEX6002799 @ mm9
Exon Skipping
Gene
ENSMUSG00000029661 | Col1a2
Description
collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
Coordinates
chr6:4469292-4470082:+
Coord C1 exon
chr6:4469292-4469345
Coord A exon
chr6:4469830-4469928
Coord C2 exon
chr6:4470038-4470082
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTGTTACTTTCATTCTCAGGGT
3' ss Score
10.2
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GGTCCCATTGGGTCTGCTGGACCCCCTGGTTTCCCAGGTGCTCCTGGTCCCAAG
Seq A exon
GGTGAACTTGGGCCCGTTGGTAACCCTGGCCCTGCTGGTCCTGCTGGTCCCCGTGGTGAAGTGGGTCTTCCAGGTCTTTCTGGCCCTGTTGGACCTCCT
Seq C2 exon
GGCAACCCTGGAACAAATGGGCTCACTGGCGCCAAGGGTGCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029661-'20-22,'20-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.0=100),PF0139113=Collagen=FE(19.8=100)
A:
PF0139113=Collagen=PD(2.5=6.1),PF0139113=Collagen=FE(37.2=100),PF0139113=Collagen=PU(2.0=6.1)
C2:
PF0139113=Collagen=FE(16.3=100),PF0139113=Collagen=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCATTGGGTCTGCTGGAC
R:
TAGCACCCTTGGCGCCAG
Band lengths:
95-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: