GgaEX1016492 @ galGal3
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
NA
Coordinates
chr2:23545408-23547541:+
Coord C1 exon
chr2:23545408-23545461
Coord A exon
chr2:23547310-23547408
Coord C2 exon
chr2:23547497-23547541
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTATCCTTTTCTCAAACAGGGT
3' ss Score
10.89
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGCCCCATTGGTGCTGCTGGTCCTCCAGGCTTCCCAGGTGCTCCTGGTGCTAAG
Seq A exon
GGTGAAATCGGACCTGCTGGTAATGTTGGCCCTACTGGTCCTGCTGGTCCAAGAGGAGAGATTGGACTTCCTGGTTCCAGTGGTCCTGTTGGCCCTCCC
Seq C2 exon
GGCAACCCTGGTGCTAATGGTCTTCCTGGGGCTAAAGGTGCAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.8=100),PF0139113=Collagen=FE(20.5=100)
A:
PF0139113=Collagen=PD(2.6=6.1),PF0139113=Collagen=FE(38.6=100)
C2:
PF0139113=Collagen=FE(16.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTGGTGCTGCTGGTC
R:
GCTGCACCTTTAGCCCCAG
Band lengths:
95-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]