GgaEX1016492 @ galGal4
Exon Skipping
Gene
ENSGALG00000009641 | COL1A2
Description
collagen alpha-2(I) chain precursor [Source:RefSeq peptide;Acc:NP_001073182]
Coordinates
chr2:23716486-23719433:+
Coord C1 exon
chr2:23716486-23716539
Coord A exon
chr2:23718388-23718486
Coord C2 exon
chr2:23719380-23719433
Length
99 bp
Sequences
Splice sites
3' ss Seq
TTTATCCTTTTCTCAAACAGGGT
3' ss Score
10.89
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GGCCCCATTGGTGCTGCTGGTCCTCCAGGCTTCCCAGGTGCTCCTGGTGCTAAG
Seq A exon
GGTGAAATCGGACCTGCTGGTAATGTTGGCCCTACTGGTCCTGCTGGTCCAAGAGGAGAGATTGGACTTCCTGGTTCCAGTGGTCCTGTTGGCCCTCCC
Seq C2 exon
GGTGAACCAGGCCCTGCTGGTGCCAAGGGAGAAAGTGGTAACAAGGGTGAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009641_MULTIEX2-8/39=7-11
Average complexity
C3
Mappability confidence:
93%=100=95%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(21.8=100),PF0139113=Collagen=FE(20.5=100)
A:
PF0139113=Collagen=PD(9.5=21.2),PF0139113=Collagen=FE(38.6=100)
C2:
PF0139113=Collagen=FE(22.1=100),PF0139113=Collagen=PU(18.7=94.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGTGCTGCTGGTCCTC
R:
AGGCTCACCCTTGTTACCACT
Band lengths:
103-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]