DreEX6076572 @ danRer10
Exon Skipping
Gene
ENSDARG00000075509 | phf12b
Description
PHD finger protein 12b [Source:ZFIN;Acc:ZDB-GENE-110628-2]
Coordinates
chr15:24623117-24623703:+
Coord C1 exon
chr15:24623117-24623224
Coord A exon
chr15:24623361-24623519
Coord C2 exon
chr15:24623605-24623703
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATTCTTTTTCCAATGTATAGAAG
3' ss Score
3.65
5' ss Seq
ACGGTAACA
5' ss Score
6.72
Exon sequences
Seq C1 exon
AGAACAAAGTGAGCCCTGACTTAATGTCTGCTGGAAAAGGCTCAACGCTCCCGTCTTCAATAGGCAGCTTATACAGCTACATCAAGAATGTGGTTCAAGGCGATACAG
Seq A exon
AAGTGGACATGAATAAGCTGGATGAGGAGTTGATCAGACTCATGGCTTGGCAGAGGATCCAGCAGCTGTTGTCTCCCAAATCACTTCAAGCCTCGAGTAAATGTGGGACTCCTCCAGCTGCCACTGCCTCTCTGTCCAAACCCTCCCTGCATGCAGACG
Seq C2 exon
CACAAAAAAGGGACGTACAAGCTCGAGCAGTACTATGTCCTTTAACAGGAAAGGGGGCAGCTATCAACATGTGCTATAGAACTCTGTACATAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075509-'12-20,'12-18,13-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=0.111 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0049821=FHA=PU(7.9=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACAAAGTGAGCCCTGACT
R:
TCCTATGTACAGAGTTCTATAGCACA
Band lengths:
203-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]