MmuEX0034712 @ mm10
Exon Skipping
Gene
ENSMUSG00000037791 | Phf12
Description
PHD finger protein 12 [Source:MGI Symbol;Acc:MGI:1924057]
Coordinates
chr11:78024961-78027418:+
Coord C1 exon
chr11:78024961-78025086
Coord A exon
chr11:78025885-78026028
Coord C2 exon
chr11:78027320-78027418
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTTTGGTTGATAGAAA
3' ss Score
6.04
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAACGGAG
Seq A exon
AAATCGAGATAAATATGTTGGATGAGAAGCTGATCAAGTTTCTGGCCTTGCAGAGAGTACATCAGCTTTTCCCTTCCCGGGTCCAAGCTTCACCGGGCAATGTTGGGACACATCCGCTGGCTTCTGGAGGGCACCACCCAGAAG
Seq C2 exon
TGCAAAGAAAGGAGGTACAGGCCCGAGCTGTGTTCTGCCCCCTCTTAGGGTTGGGAGGAGCTGTGAACATGTGCTATCGAACCCTCTACATCGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037791_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.249 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0049821=FHA=PU(7.7=14.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGTTATCCATAGGAAGCG
R:
CCGATGTAGAGGGTTCGATAGC
Band lengths:
203-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types