BtaEX0026778 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015976 | PHF12
Description
PHD finger protein 12 [Source:HGNC Symbol;Acc:HGNC:20816]
Coordinates
chr19:20838780-20840812:-
Coord C1 exon
chr19:20840687-20840812
Coord A exon
chr19:20839711-20839854
Coord C2 exon
chr19:20838780-20838878
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTCTTTGGTTAATAGAAA
3' ss Score
6.77
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTCATGGATGTCAATGGAG
Seq A exon
AAATCGAGATAAATATGCTGGACGAGAAGCTGATCAAGTTTCTGGCCTTGCAGAGAATACATCAGCTTTTCCCCTCCCGGGTCCAAGCTTCACCGGGCGGTGTCGGGGCACATCCGCTGGCTTCTGGAGGGCACCACATGGAAG
Seq C2 exon
TGCAGAGAAGGGAAGTACAGGCCCGAGCTGTGTTCTACCCCCTCTTAGGGTTGGGAGGCGCTGTGAACATGTGCTATCGAACCCTCTACATCGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015976_MULTIEX1-5/8=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.209 A=0.163 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0049821=FHA=PU(7.7=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGTTATCCATAGGAAGCG
R:
CCGATGTAGAGGGTTCGATAGC
Band lengths:
203-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development