RnoEX0065298 @ rn6
Exon Skipping
Gene
ENSRNOG00000009566 | Phf12
Description
PHD finger protein 12 [Source:RGD Symbol;Acc:1305731]
Coordinates
chr10:64818566-64820778:-
Coord C1 exon
chr10:64820653-64820778
Coord A exon
chr10:64819932-64820075
Coord C2 exon
chr10:64818566-64818664
Length
144 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTCTTTGGTTGATAGAAA
3' ss Score
6.04
5' ss Seq
AAGGTGCGC
5' ss Score
9.05
Exon sequences
Seq C1 exon
ATGGCAAGGTCAGCCCCGGCACGTTATCCATAGGAAGCGCTTTAACCGTACCCTCTTTCCCAGCCAACTCTACTGCCATGGTGGACCTCACCAACTCACTTCGAGCATTTATGGATGTCAGCGGAG
Seq A exon
AAATCGAGATAAATATGTTGGACGAGAAGCTGATCAAGTTTCTGGCCTTGCAGAGAATACATCAGCTTTTCCCTTCCCGGGGTCAAGCTTCACCGGGCAGTGTTGGGACACATCCGCTGTCTTCTGGAGGGCACCACACAGAAG
Seq C2 exon
TGCAAAGGAAGGAGGTACAAGCCCGAGCTGTGTTCTACCCCCTCTTAGGGTTGGGAGGAGCTGTGAACATGTGCTATCGAACCCTCTACATCGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009566_MULTIEX1-2/2=C1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.267 A=0.442 C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0049821=FHA=PU(7.7=14.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACGTTATCCATAGGAAGCG
R:
CCGATGTAGAGGGTTCGATAGC
Band lengths:
203-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]