DreEX0055010 @ danRer10
Exon Skipping
Gene
ENSDARG00000074303 | phf12a
Description
PHD finger protein 12a [Source:ZFIN;Acc:ZDB-GENE-030131-3876]
Coordinates
chr10:36871511-36873346:-
Coord C1 exon
chr10:36873230-36873346
Coord A exon
chr10:36871681-36871824
Coord C2 exon
chr10:36871511-36871603
Length
144 bp
Sequences
Splice sites
3' ss Seq
TTATTGTGTTTGTTTTGCAGAGG
3' ss Score
10.45
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTGGAAAGTCCAGTCTGGACTCAGTGATGGCAGGCAGTGGGGACATCTCCTCTTGCACAGAACCCAACATGTCAGAGCTGTCCGGTCGGATAAAAGACATCATGCAGGGCGGTGGAG
Seq A exon
AGGTTGAGCTTAACGCATTAGATGAGAAATTTATCAAGCTTTTGGCCTGGCAGCGGATTCAGCAGCTTTTTGACTCAAAATCATCTCCTGTTCAGAGCAGTTCTCCTTTATCCGTTTCTCCGGCTCATAGGAAACACGGTGAAG
Seq C2 exon
CTCAGAACAGGGAGGTGCAAGCAAGAGCTTCATTCTGTTCGGTCTCAGGAAATGCTGTCAACATGTGCTACAGGAGTCTGCACATCGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074303-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.825 A=0.367 C2=0.062
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0049821=FHA=PU(6.9=15.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTCTGGACTCAGTGATGG
R:
CTGTCCCGATGTGCAGACTC
Band lengths:
202-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]