GgaEX0005364 @ galGal3
Exon Skipping
Gene
ENSGALG00000004029 | PHF12
Description
NA
Coordinates
chr19:5848879-5852319:-
Coord C1 exon
chr19:5852197-5852319
Coord A exon
chr19:5850717-5850860
Coord C2 exon
chr19:5848879-5848977
Length
144 bp
Sequences
Splice sites
3' ss Seq
TGCTTTTTGTTTGTTAACAGAGA
3' ss Score
8.54
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGGTAAGGTCAGCCCCAGCACCTTATCCATAGGAAGCGCTTTAACTCTACCCTCATCGCTCACTTCAAACTCTGCAGCTATGTTGGACCTCACCAGTTCCCTGAAAGCGTTTATGGATGGCG
Seq A exon
AGATTGAGATAAATATGCTGGATGAGCAGCTGATCAAGTTTCTGGCCTTGCAGAGAATACATCAGCTCTTTCCTTCCAAAGCTCAGTCTCTAGCAAGCAGTGTCAGTGCCCATCAGCAATCTCCTGTGGCAAACCACATTGAAG
Seq C2 exon
CGCAAAGAAAGGAAGTGCAAGCCCGGGCAGTGTTCTACCCTCTGATGGGCTTGGGGGGTGCAGTCAATATGTGCTATCGAACCCTCTACATTGGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004029_MULTIEX1-6/6=5-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=0.102 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0049821=FHA=PU(7.7=14.7)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTAAGGTCAGCCCCAGC
R:
TGTCCCAATGTAGAGGGTTCGA
Band lengths:
221-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]