DreEX6079183 @ danRer10
Exon Skipping
Gene
ENSDARG00000058543 | lama5
Description
laminin, alpha 5 [Source:ZFIN;Acc:ZDB-GENE-030131-9823]
Coordinates
chr23:9716047-9716725:-
Coord C1 exon
chr23:9716622-9716725
Coord A exon
chr23:9716375-9716528
Coord C2 exon
chr23:9716047-9716210
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTGTCTTTTGTTGTGCTCAGCTG
3' ss Score
8.99
5' ss Seq
GATGTGAGC
5' ss Score
4.72
Exon sequences
Seq C1 exon
GACTATCTGGTGCTGTTGCCCAGTGCGTATTACGAGGCTCCTATCCTGCAGCTTCAAGTGACTGAGCCCTGTTCATACAGCCACACACAGGACGCTAGTCAGAA
Seq A exon
CTGTCTGCAGTACATGTATCTGTCTCTGGATGAGTTCCCATCCATCTCCAGCAATGATGCCAGCTGCAGGTCTGATAATCACCTGCCCAGACCCTGCCACACTGAAAAGATCACGCCTCGCCATCCCAGCATGGCCATCTGCAGCGGCAATGAT
Seq C2 exon
ATCAGCGTTGGGCTGCGTGGTCGAGTTCCTGTTCCTGGAGAGTATGTGTTAGTGGTAGAATACGCCAGTGAAGATCAAGCCCCTCAAAACCTTACAGTGTCTGTCAGCTCAGCAGGTGAATCCACTCATCAGGAGCAAATAACACTGCTCCACTGCAAATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058543-'29-26,'29-25,30-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.096 C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGCCCAGTGCGTATTACGA
R:
GCAGTGGAGCAGTGTTATTTGC
Band lengths:
246-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]