RnoEX6020606 @ rn6
Exon Skipping
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175571445-175572246:-
Coord C1 exon
chr3:175572140-175572246
Coord A exon
chr3:175571914-175572067
Coord C2 exon
chr3:175571445-175571605
Length
154 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCTTCTCTCCTCCAGCTG
3' ss Score
11.42
5' ss Seq
GATGTGGGT
5' ss Score
2.02
Exon sequences
Seq C1 exon
GACTACGTGGTCCTCCTGCCCAGCACCTACTACGAGGCAGCTCTCCTACAGCATCGAGTAACCGAGGCCTGTACCTACCATCCCTCAGCCCTGCACCCCACAGAGAA
Seq A exon
CTGTCTCCTCTATGCTCACCTACCCCTGGATGGCTTCCCTTCCGCTGCTGGAACTGAGGCCCTGTGTCGCCATGACAACAGCCTGCCCCGGCCCTGCCCCACAGAGCAGCTCAGCCCCTTACACCCGCCCTTGGCGACCTGTGCCGGCAGTGAT
Seq C2 exon
GTGGACATCCAGCTTGAGATGGCGGTGCCTCGGCCAGGCCGATATGCTCTCGTGGTGGAGTACGTCAGTGAGTATTCACACCAGGAGATGGGCGTGGCTGTGCACACCCCTCAGAGAGCCCCGCAGCAGGGGATGATCGACCTCCACCCCTGTCCCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691-'32-30,'32-29,33-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.115 C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCCCAGCACCTACTAC
R:
GTGGAGGTCGATCATCCCCTG
Band lengths:
242-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]