MmuEX6107478 @ mm10
Exon Skipping
Gene
ENSMUSG00000015647 | Lama5
Description
laminin, alpha 5 [Source:MGI Symbol;Acc:MGI:105382]
Coordinates
chr2:180194675-180195478:-
Coord C1 exon
chr2:180195372-180195478
Coord A exon
chr2:180195146-180195299
Coord C2 exon
chr2:180194675-180194835
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTTCTGTCTCTCTTCTCCAGCTG
3' ss Score
11.61
5' ss Seq
GATGTGGGT
5' ss Score
2.02
Exon sequences
Seq C1 exon
GACTACGTGGTCCTACTGCCCAGCACCTACTATGAGGCAGCTCTCCTACAGCATCGAGTAACGGAGGCCTGTACCTACCGTCCCTCAGCCCTGCACTCCACAGAGAA
Seq A exon
CTGTCTTGTCTATGCTCACCTACCCCTGGATGGCTTCCCTTCAGCAGCTGGAACTGAGGCCCTGTGTCGCCATGACAACAGCCTGCCCCGGCCCTGCCCCACAGAGCAGCTCAGCCCCTCACACCCACCGCTGGCGACCTGCTTCGGCAGTGAT
Seq C2 exon
GTGGACATCCAGCTCGAGATGGCCGTGCCTCAGCCTGGCCAATATGTTCTCGTGGTGGAATATGTCGGTGAGGATTCACACCAAGAGATGGGAGTGGCTGTGCACACCCCTCAGAGAGCCCCCCAGCAAGGGGTGCTCAACCTCCACCCCTGCCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015647-'40-44,'40-42,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.115 C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCTACTATGAGGCAGCT
R:
CTGTATGGGCAGGGGTGGAG
Band lengths:
247-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types