GgaEX1032840 @ galGal3
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7833747-7835517:-
Coord C1 exon
chr20:7835411-7835517
Coord A exon
chr20:7834598-7834751
Coord C2 exon
chr20:7833747-7833907
Length
154 bp
Sequences
Splice sites
3' ss Seq
CAAATTCTTAATGCTTTTAGCTG
3' ss Score
3.16
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GACTATTTGGTTTTGCTACCCAGCTCATACTATGAAGCTCCAATACTGCAGCTAAAGGTCACGGATCCGTGTACATACCAGCCAGCCCCAGAACAAGCCACCCAGAA
Seq A exon
CTGCCTCTTGTATAAGTACCTGTCTGTGGATGGCTTCCCTGCTGTGGCAGGGGTGGGTGCAGTGTGCAGGCTGGACAACCGGTTACCCAGAGGCTGCCCCACGGAGCAGCTCACCCCTGCCCATCCTCGGATGGCGATGTGCAGCGGCAACGAC
Seq C2 exon
GTGGAAGTCCAGCTGTCGCTGCCTATTGCCCAACCTGGAAAATATGTGTTGGTGGTGGAGTACGCCAACCCCAATGCTTTGCATCCGGTGGCCGTTGCCATCAGCTCACCGCACTTAGCCATGCAGCAGGGCACGTTCACCTTCTACCCGTGTGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321-'28-32,'28-31,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGCTCATACTATGAAGCTCC
R:
CACACGGGTAGAAGGTGAACG
Band lengths:
243-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]