DreEX6079453 @ danRer10
Exon Skipping
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14403101-14413113:+
Coord C1 exon
chr23:14403101-14403252
Coord A exon
chr23:14403359-14403454
Coord C2 exon
chr23:14412943-14413113
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTCTGCTTTGACAGGTC
3' ss Score
10.13
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
CGGAAGTACAGAGTGAGATTGAGAGAATATTTGAGTTGGCCAAAACCCTTCAGCTGGTGATTCTGGATGCAGACACCATTAACCATCCAGCACAGCTAGCTAAAACCTCACTAGCACCTATTATTGTATATGTAAAGGTCACGTCTCCAAAG
Seq A exon
GTCCTACAGCGGTTGATAAAATCCAGGGGTAAATCACAGAGCAAACACCTCAATGTTCAGATGATGGCAGCAGATAAATTGACTCAGTGTCCCCCT
Seq C2 exon
GAGATGTTTGATGTCATTTTGGATGAGAACCAGTTGGAGGACGCCTGTGAGCATCTGGCTGAATATCTGGAGGTTTACTGGCGTGCCACTCATCTGCCAGGCACCACCCCTCTCAACCCGCTATTGGAGCAAAATTTGATGACCCCACCCTCTGCAATCTCCAGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881-'13-12,'13-10,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.031 C2=0.158
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(28.1=100)
A:
PF0062516=Guanylate_kin=FE(17.4=100)
C2:
PF0062516=Guanylate_kin=PD(14.0=43.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGATTCTGGATGCAGACACC
R:
CACGCCAGTAAACCTCCAGAT
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]