GgaEX1012543 @ galGal4
Exon Skipping
Gene
ENSGALG00000025788 | CACNB1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr27:4109999-4110985:-
Coord C1 exon
chr27:4110834-4110985
Coord A exon
chr27:4110649-4110744
Coord C2 exon
chr27:4109999-4110103
Length
96 bp
Sequences
Splice sites
3' ss Seq
CGCCCTCTCTCCTGCCCCAGGTG
3' ss Score
11.76
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
CTGAGGTGCAGAGTGAGACGGAGCGCATCTTCGAGCTGGCCCGGACCCTGCAGCTGGTGGCCTTGGACGCCGACACCATCAACCACCCGGCCCAGCTGGCCAAGACCTCCCTGGCACCCATCATCGTCTACATCAAAATCGCCTCCCCAAAG
Seq A exon
GTGCTGCAGCGGTTGGTGAAGTCCCGGGGCAAATCCCAGGCCAAGCACCTCAACGTGCAGATGGTGGCCTCCGACAAGCTGGCGCAGTGCCCGCCT
Seq C2 exon
GAGATGTTTGACATCGTGCTGGACGAGAACCAGCTGGAGGAGGCCTGCGAGCACCTGGCCGAGTACCTGGAGGCCTACTGGAAGGCAACGCACCCCCCCAGCAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025788_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=71.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGACGCCGACACCATC
R:
CCAGTAGGCCTCCAGGTACTC
Band lengths:
172-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]