RnoEX0016169 @ rn6
Exon Skipping
Gene
ENSRNOG00000004518 | Cacnb1
Description
calcium voltage-gated channel auxiliary subunit beta 1 [Source:RGD Symbol;Acc:68382]
Coordinates
chr10:85957751-85962262:-
Coord C1 exon
chr10:85962111-85962262
Coord A exon
chr10:85958341-85958436
Coord C2 exon
chr10:85957751-85957936
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTCCCCTCCAACCAGGTA
3' ss Score
11.97
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTGAGGTACAGAGTGAAATCGAGCGGATCTTCGAGCTGGCCCGGACCTTGCAGCTGGTTGCCCTGGACGCCGACACCATCAACCACCCAGCCCAGCTCTCTAAAACCTCGCTGGCCCCCATCATTGTTTACATCAAGATCACATCCCCCAAG
Seq A exon
GTACTGCAGAGGCTCATCAAATCCCGAGGGAAGTCTCAATCCAAACACCTCAATGTCCAAATAGCAGCCTCGGAGAAGCTGGCACAGTGTCCCCCC
Seq C2 exon
GAAATGTTTGACATAATCCTGGACGAGAACCAATTGGAAGATGCCTGCGAGCACCTGGCGGAGTACTTGGAAGCCTACTGGAAGGCCACACACCCGCCTAGCAGCACGCCACCCAATCCGCTGCTGAACCGCACCATGGCTACCGCCGCTCTGGCTGCCAGCCCTGCCCCCGTCTCCAACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004518-'26-17,'26-15,27-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.484
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(27.6=100)
A:
PF0062516=Guanylate_kin=FE(17.1=100)
C2:
PF0062516=Guanylate_kin=PD(13.8=40.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATCGAGCGGATCTTCGAGC
R:
CCAATTGGTTCTCGTCCAGGA
Band lengths:
174-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]